Jalview Version 2-a multiple sequence alignment editor and analysis workbench

Andrew M. Waterhouse; James B. Procter; David M. A. Martin; Michele Clamp; Geoffrey J. Barton

doi:10.1093/bioinformatics/btp033

Jalview Version 2-a multiple sequence alignment editor and analysis workbench

Andrew M. Waterhouse, James B. Procter, David M. A. Martin, Michele Clamp, Geoffrey J. Barton (Lead / Corresponding author)

Research output: Contribution to journal › Article › peer-review

6790 Citations (Scopus)

Abstract

Jalview Version 2 is a system for interactive WYSIWYG editing, analysis and annotation of multiple sequence alignments. Core features include keyboard and mouse-based editing, multiple views and alignment overviews, and linked structure display with Jmol. Jalview 2 is available in two forms: a lightweight Java applet for use in web applications, and a powerful desktop application that employs web services for sequence alignment, secondary structure prediction and the retrieval of alignments, sequences, annotation and structures from public databases and any DAS 1.53 compliant sequence or annotation server.

Original language	English
Pages (from-to)	1189-1191
Number of pages	3
Journal	Bioinformatics
Volume	25
Issue number	9
DOIs	https://doi.org/10.1093/bioinformatics/btp033
Publication status	Published - 1 May 2009

Keywords

SECONDARY STRUCTURE
STRUCTURAL BIOLOGY
PROTEIN SEQUENCES
ACCURACY
TOOLS
SYSTEM

Access to Document

10.1093/bioinformatics/btp033

Cite this

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title = "Jalview Version 2-a multiple sequence alignment editor and analysis workbench",

abstract = "Jalview Version 2 is a system for interactive WYSIWYG editing, analysis and annotation of multiple sequence alignments. Core features include keyboard and mouse-based editing, multiple views and alignment overviews, and linked structure display with Jmol. Jalview 2 is available in two forms: a lightweight Java applet for use in web applications, and a powerful desktop application that employs web services for sequence alignment, secondary structure prediction and the retrieval of alignments, sequences, annotation and structures from public databases and any DAS 1.53 compliant sequence or annotation server.",

keywords = "SECONDARY STRUCTURE, STRUCTURAL BIOLOGY, PROTEIN SEQUENCES, ACCURACY, TOOLS, SYSTEM",

author = "Waterhouse, {Andrew M.} and Procter, {James B.} and Martin, {David M. A.} and Michele Clamp and Barton, {Geoffrey J.}",

year = "2009",

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doi = "10.1093/bioinformatics/btp033",

language = "English",

volume = "25",

pages = "1189--1191",

journal = "Bioinformatics",

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T1 - Jalview Version 2-a multiple sequence alignment editor and analysis workbench

AU - Waterhouse, Andrew M.

AU - Procter, James B.

AU - Martin, David M. A.

AU - Clamp, Michele

AU - Barton, Geoffrey J.

PY - 2009/5/1

Y1 - 2009/5/1

N2 - Jalview Version 2 is a system for interactive WYSIWYG editing, analysis and annotation of multiple sequence alignments. Core features include keyboard and mouse-based editing, multiple views and alignment overviews, and linked structure display with Jmol. Jalview 2 is available in two forms: a lightweight Java applet for use in web applications, and a powerful desktop application that employs web services for sequence alignment, secondary structure prediction and the retrieval of alignments, sequences, annotation and structures from public databases and any DAS 1.53 compliant sequence or annotation server.

AB - Jalview Version 2 is a system for interactive WYSIWYG editing, analysis and annotation of multiple sequence alignments. Core features include keyboard and mouse-based editing, multiple views and alignment overviews, and linked structure display with Jmol. Jalview 2 is available in two forms: a lightweight Java applet for use in web applications, and a powerful desktop application that employs web services for sequence alignment, secondary structure prediction and the retrieval of alignments, sequences, annotation and structures from public databases and any DAS 1.53 compliant sequence or annotation server.

KW - SECONDARY STRUCTURE

KW - STRUCTURAL BIOLOGY

KW - PROTEIN SEQUENCES

KW - ACCURACY

KW - TOOLS

KW - SYSTEM

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DO - 10.1093/bioinformatics/btp033

M3 - Article

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SN - 1367-4803

VL - 25

SP - 1189

EP - 1191

JO - Bioinformatics

JF - Bioinformatics

IS - 9

ER -

Jalview Version 2-a multiple sequence alignment editor and analysis workbench

Abstract

Keywords

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Aref#d: 21202. Jalview: A Sequence Analysis Resource

Cite this

Jalview Version 2-a multiple sequence alignment editor and analysis workbench

Abstract

Keywords

Access to Document

Other files and links

Fingerprint

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Aref#d: 21202. Jalview: A Sequence Analysis Resource

Cite this