Jalview Version 2-a multiple sequence alignment editor and analysis workbench

Andrew M. Waterhouse, James B. Procter, David M. A. Martin, Michele Clamp, Geoffrey J. Barton (Lead / Corresponding author)

    Research output: Contribution to journalArticle

    3914 Citations (Scopus)

    Abstract

    Jalview Version 2 is a system for interactive WYSIWYG editing, analysis and annotation of multiple sequence alignments. Core features include keyboard and mouse-based editing, multiple views and alignment overviews, and linked structure display with Jmol. Jalview 2 is available in two forms: a lightweight Java applet for use in web applications, and a powerful desktop application that employs web services for sequence alignment, secondary structure prediction and the retrieval of alignments, sequences, annotation and structures from public databases and any DAS 1.53 compliant sequence or annotation server.

    Original languageEnglish
    Pages (from-to)1189-1191
    Number of pages3
    JournalBioinformatics
    Volume25
    Issue number9
    DOIs
    Publication statusPublished - 1 May 2009

    Keywords

    • SECONDARY STRUCTURE
    • STRUCTURAL BIOLOGY
    • PROTEIN SEQUENCES
    • ACCURACY
    • TOOLS
    • SYSTEM

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