JPred: a consensus secondary structure prediction server

J A Cuff; M E Clamp; A S Siddiqui; M Finlay; G J Barton

doi:10.1093/bioinformatics/14.10.892

JPred: a consensus secondary structure prediction server

J A Cuff, M E Clamp, A S Siddiqui, M Finlay, G J Barton

Computational Biology

Research output: Contribution to journal › Article › peer-review

935 Citations (Scopus)

Abstract

UNLABELLED: An interactive protein secondary structure prediction Internet server is presented. The server allows a single sequence or multiple alignment to be submitted, and returns predictions from six secondary structure prediction algorithms that exploit evolutionary information from multiple sequences. A consensus prediction is also returned which improves the average Q3 accuracy of prediction by 1% to 72.9%. The server simplifies the use of current prediction algorithms and allows conservation patterns important to structure and function to be identified.

AVAILABILITY: http://barton.ebi.ac.uk/servers/jpred.h tml

CONTACT: [email protected]

Original language	English
Pages (from-to)	892-3
Number of pages	2
Journal	Bioinformatics
Volume	14
Issue number	10
DOIs	https://doi.org/10.1093/bioinformatics/14.10.892
Publication status	Published - 1998

Keywords

Algorithms
Computational Biology
Consensus Sequence
Internet
Protein Structure, Secondary
Sequence Alignment
Software

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10.1093/bioinformatics/14.10.892

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@article{f42a1cf5d7734e038dc12e4604488496,

title = "JPred: a consensus secondary structure prediction server",

abstract = "UNLABELLED: An interactive protein secondary structure prediction Internet server is presented. The server allows a single sequence or multiple alignment to be submitted, and returns predictions from six secondary structure prediction algorithms that exploit evolutionary information from multiple sequences. A consensus prediction is also returned which improves the average Q3 accuracy of prediction by 1% to 72.9%. The server simplifies the use of current prediction algorithms and allows conservation patterns important to structure and function to be identified.AVAILABILITY: http://barton.ebi.ac.uk/servers/jpred.h tmlCONTACT: [email protected]",

keywords = "Algorithms, Computational Biology, Consensus Sequence, Internet, Protein Structure, Secondary, Sequence Alignment, Software",

author = "Cuff, {J A} and Clamp, {M E} and Siddiqui, {A S} and M Finlay and Barton, {G J}",

year = "1998",

doi = "10.1093/bioinformatics/14.10.892",

language = "English",

volume = "14",

pages = "892--3",

journal = "Bioinformatics",

issn = "1367-4803",

publisher = "Oxford University Press",

number = "10",

}

TY - JOUR

T1 - JPred

T2 - a consensus secondary structure prediction server

AU - Cuff, J A

AU - Clamp, M E

AU - Siddiqui, A S

AU - Finlay, M

AU - Barton, G J

PY - 1998

Y1 - 1998

N2 - UNLABELLED: An interactive protein secondary structure prediction Internet server is presented. The server allows a single sequence or multiple alignment to be submitted, and returns predictions from six secondary structure prediction algorithms that exploit evolutionary information from multiple sequences. A consensus prediction is also returned which improves the average Q3 accuracy of prediction by 1% to 72.9%. The server simplifies the use of current prediction algorithms and allows conservation patterns important to structure and function to be identified.AVAILABILITY: http://barton.ebi.ac.uk/servers/jpred.h tmlCONTACT: [email protected]

AB - UNLABELLED: An interactive protein secondary structure prediction Internet server is presented. The server allows a single sequence or multiple alignment to be submitted, and returns predictions from six secondary structure prediction algorithms that exploit evolutionary information from multiple sequences. A consensus prediction is also returned which improves the average Q3 accuracy of prediction by 1% to 72.9%. The server simplifies the use of current prediction algorithms and allows conservation patterns important to structure and function to be identified.AVAILABILITY: http://barton.ebi.ac.uk/servers/jpred.h tmlCONTACT: [email protected]

KW - Algorithms

KW - Computational Biology

KW - Consensus Sequence

KW - Internet

KW - Protein Structure, Secondary

KW - Sequence Alignment

KW - Software

U2 - 10.1093/bioinformatics/14.10.892

DO - 10.1093/bioinformatics/14.10.892

M3 - Article

C2 - 9927721

SN - 1367-4803

VL - 14

SP - 892

EP - 893

JO - Bioinformatics

JF - Bioinformatics

IS - 10

ER -

JPred: a consensus secondary structure prediction server

Abstract

Keywords

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