Long noncoding RNA modulates alternative splicing regulators in Arabidopsis

Florian Bardou, Federico Ariel, Craig G. Simpson, Natali Romero-Barrios, Philippe Laporte, Sandrine Balzergue, John W. S. Brown, Martin Crespi (Lead / Corresponding author)

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124 Citations (Scopus)

Abstract

Alternative splicing (AS) of pre-mRNA represents a major mechanism underlying increased transcriptome and proteome complexity. Here, we show that the nuclear speckle RNA-binding protein (NSR) and the AS competitor long noncoding RNA (or ASCO-lncRNA) constitute an AS regulatory module. AtNSR-GFP translational fusions are expressed in primary and lateral root (LR) meristems. Double Atnsr mutants and ASCO overexpressors exhibit an altered ability to form LRs after auxin treatment. Interestingly, auxin induces a major change in AS patterns of many genes, a response largely dependent on NSRs. RNA immunoprecipitation assays demonstrate that AtNSRs interact not only with their alternatively spliced mRNA targets but also with the ASCO-RNA in vivo. The ASCO-RNA displaces an AS target from an NSR-containing complex in vitro. Expression of ASCO-RNA in Arabidopsis affects the splicing patterns of several NSR-regulated mRNA targets. Hence, lncRNA can hijack nuclear AS regulators to modulate AS patterns during development.

Original languageEnglish
Pages (from-to)166-176
Number of pages11
JournalDevelopmental Cell
Volume30
Issue number2
Early online date28 Jul 2014
DOIs
Publication statusPublished - 2014

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Bardou, F., Ariel, F., Simpson, C. G., Romero-Barrios, N., Laporte, P., Balzergue, S., Brown, J. W. S., & Crespi, M. (2014). Long noncoding RNA modulates alternative splicing regulators in Arabidopsis. Developmental Cell, 30(2), 166-176. https://doi.org/10.1016/j.devcel.2014.06.017