MSAViewer: interactive JavaScript visualization of multiple sequence alignments

Guy Yachdav; Sebastian Wilzbach; Benedikt Rauscher; Robert Sheridan; Ian Sillitoe; James Procter; Suzanna E. Lewis; Burkhard Rost; Tatyana Goldberg

doi:10.1093/bioinformatics/btw474

MSAViewer: interactive JavaScript visualization of multiple sequence alignments

Guy Yachdav, Sebastian Wilzbach, Benedikt Rauscher, Robert Sheridan, Ian Sillitoe, James Procter, Suzanna E. Lewis, Burkhard Rost, Tatyana Goldberg (Lead / Corresponding author)

Computational Biology

Research output: Contribution to journal › Article › peer-review

128 Citations (Scopus)

255 Downloads (Pure)

Abstract

The MSAViewer is a quick and easy visualization and analysis JavaScript component for Multiple Sequence Alignment data of any size. Core features include interactive navigation through the alignment, application of popular color schemes, sorting, selecting and filtering. The MSAViewer is 'web ready': written entirely in JavaScript, compatible with modern web browsers and does not require any specialized software. The MSAViewer is part of the BioJS collection of components.

Original language	English
Pages (from-to)	3501-3503
Number of pages	3
Journal	Bioinformatics
Volume	32
Issue number	22
Early online date	13 Jul 2016
DOIs	https://doi.org/10.1093/bioinformatics/btw474
Publication status	Published - 15 Nov 2016

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10.1093/bioinformatics/btw474Licence: CC BY-NC

Final Published Version
© The Author 2016. Published by Oxford University Press. This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact [email protected]
Final published version, 329 KBLicence: CC BY-NC

The Jalview Resource for Sequence Analysis and Annotation (Bioinformatics and Biomedical Resource Fund)
Barton, G. (Investigator) & Procter, J. (Investigator)
Biotechnology and Biological Sciences Research Council
1/10/14 → 30/09/19
Project: Research

Cite this

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title = "MSAViewer: interactive JavaScript visualization of multiple sequence alignments",

abstract = "The MSAViewer is a quick and easy visualization and analysis JavaScript component for Multiple Sequence Alignment data of any size. Core features include interactive navigation through the alignment, application of popular color schemes, sorting, selecting and filtering. The MSAViewer is 'web ready': written entirely in JavaScript, compatible with modern web browsers and does not require any specialized software. The MSAViewer is part of the BioJS collection of components.",

author = "Guy Yachdav and Sebastian Wilzbach and Benedikt Rauscher and Robert Sheridan and Ian Sillitoe and James Procter and Lewis, {Suzanna E.} and Burkhard Rost and Tatyana Goldberg",

note = "This work was supported by a grant from the German Federal Ministry for Education and Research (BMBF), Ernst Ludwig Ehrlich Studienwerk and the Google Summer of Code program sponsored by Google Inc.",

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doi = "10.1093/bioinformatics/btw474",

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AU - Yachdav, Guy

AU - Wilzbach, Sebastian

AU - Rauscher, Benedikt

AU - Sheridan, Robert

AU - Sillitoe, Ian

AU - Procter, James

AU - Lewis, Suzanna E.

AU - Rost, Burkhard

AU - Goldberg, Tatyana

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DO - 10.1093/bioinformatics/btw474

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MSAViewer: interactive JavaScript visualization of multiple sequence alignments

Abstract

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Projects

The Jalview Resource for Sequence Analysis and Annotation (Bioinformatics and Biomedical Resource Fund)

Cite this