NetSlim: High-confidence curated signaling maps

Rajesh Raju; Vishalakshi Nanjappa; Lavanya Balakrishnan; Aneesha Radhakrishnan; Joji Kurian Thomas; Jyoti Sharma; Maozhen Tian; Shyam Mohan Palapetta; Tejaswini Subbannayya; Nirujogi Raja Sekhar; Babylakshmi Muthusamy; Renu Goel; Yashwanth Subbannayya; Deepthi Telikicherla; Mitali Bhattacharjee; Sneha M. Pinto; Nazia Syed; Manda Srinivas Srikanth; Gajanan J. Sathe; Sartaj Ahmad; Sandip N. Chavan; Ghantasala S. Sameer Kumar; Arivusudar Marimuthu; T. S. K. Prasad; H. C. Harsha; B. Abdul Rahiman; Osamu Ohara; Gary D. Bader; S. Sujatha Mohan; William P. Schiemann; Akhilesh Pandey

doi:10.1093/database/bar032

NetSlim: High-confidence curated signaling maps

Rajesh Raju, Vishalakshi Nanjappa, Lavanya Balakrishnan, Aneesha Radhakrishnan, Joji Kurian Thomas, Jyoti Sharma, Maozhen Tian, Shyam Mohan Palapetta, Tejaswini Subbannayya, Nirujogi Raja Sekhar, Babylakshmi Muthusamy, Renu Goel, Yashwanth Subbannayya, Deepthi Telikicherla, Mitali Bhattacharjee, Sneha M. Pinto, Nazia Syed, Manda Srinivas Srikanth, Gajanan J. Sathe, Sartaj AhmadSandip N. Chavan, Ghantasala S. Sameer Kumar, Arivusudar Marimuthu, T. S. K. Prasad, H. C. Harsha, B. Abdul Rahiman, Osamu Ohara, Gary D. Bader, S. Sujatha Mohan, William P. Schiemann, Akhilesh Pandey

MRC PPU

Research output: Contribution to journal › Article › peer-review

24 Citations (Scopus)

Abstract

We previously developed NetPath as a resource for comprehensive manually curated signal transduction pathways. The pathways in NetPath contain a large number of molecules and reactions which can sometimes be difficult to visualize or interpret given their complexity. To overcome this potential limitation, we have developed a set of more stringent curation and inclusion criteria for pathway reactions to generate high-confidence signaling maps. NetSlim is a new resource that contains this 'core' subset of reactions for each pathway for easy visualization and manipulation. The pathways in NetSlim are freely available at http://www.netpath.org/netslim.

Original language	English
Article number	bar032
Number of pages	9
Journal	Database
Volume	2011
DOIs	https://doi.org/10.1093/database/bar032
Publication status	Published - 2011

ASJC Scopus subject areas

Information Systems
General Biochemistry,Genetics and Molecular Biology
General Agricultural and Biological Sciences

Access to Document

10.1093/database/bar032

Cite this

Raju, R., Nanjappa, V., Balakrishnan, L., Radhakrishnan, A., Thomas, J. K., Sharma, J., Tian, M., Palapetta, S. M., Subbannayya, T., Sekhar, N. R., Muthusamy, B., Goel, R., Subbannayya, Y., Telikicherla, D., Bhattacharjee, M., Pinto, S. M., Syed, N., Srikanth, M. S., Sathe, G. J., ... Pandey, A. (2011). NetSlim: High-confidence curated signaling maps. Database, 2011, Article bar032. https://doi.org/10.1093/database/bar032

@article{91ebc2837cd7495889e5a875f82d0f2e,

title = "NetSlim: High-confidence curated signaling maps",

abstract = "We previously developed NetPath as a resource for comprehensive manually curated signal transduction pathways. The pathways in NetPath contain a large number of molecules and reactions which can sometimes be difficult to visualize or interpret given their complexity. To overcome this potential limitation, we have developed a set of more stringent curation and inclusion criteria for pathway reactions to generate high-confidence signaling maps. NetSlim is a new resource that contains this 'core' subset of reactions for each pathway for easy visualization and manipulation. The pathways in NetSlim are freely available at http://www.netpath.org/netslim.",

author = "Rajesh Raju and Vishalakshi Nanjappa and Lavanya Balakrishnan and Aneesha Radhakrishnan and Thomas, {Joji Kurian} and Jyoti Sharma and Maozhen Tian and Palapetta, {Shyam Mohan} and Tejaswini Subbannayya and Sekhar, {Nirujogi Raja} and Babylakshmi Muthusamy and Renu Goel and Yashwanth Subbannayya and Deepthi Telikicherla and Mitali Bhattacharjee and Pinto, {Sneha M.} and Nazia Syed and Srikanth, {Manda Srinivas} and Sathe, {Gajanan J.} and Sartaj Ahmad and Chavan, {Sandip N.} and Kumar, {Ghantasala S. Sameer} and Arivusudar Marimuthu and Prasad, {T. S. K.} and Harsha, {H. C.} and Rahiman, {B. Abdul} and Osamu Ohara and Bader, {Gary D.} and Mohan, {S. Sujatha} and Schiemann, {William P.} and Akhilesh Pandey",

year = "2011",

doi = "10.1093/database/bar032",

language = "English",

volume = "2011",

journal = "Database",

issn = "1758-0463",

publisher = "Oxford University Press",

}

Raju, R, Nanjappa, V, Balakrishnan, L, Radhakrishnan, A, Thomas, JK, Sharma, J, Tian, M, Palapetta, SM, Subbannayya, T, Sekhar, NR, Muthusamy, B, Goel, R, Subbannayya, Y, Telikicherla, D, Bhattacharjee, M, Pinto, SM, Syed, N, Srikanth, MS, Sathe, GJ, Ahmad, S, Chavan, SN, Kumar, GSS, Marimuthu, A, Prasad, TSK, Harsha, HC, Rahiman, BA, Ohara, O, Bader, GD, Mohan, SS, Schiemann, WP & Pandey, A 2011, 'NetSlim: High-confidence curated signaling maps', Database, vol. 2011, bar032. https://doi.org/10.1093/database/bar032

TY - JOUR

T1 - NetSlim

T2 - High-confidence curated signaling maps

AU - Raju, Rajesh

AU - Nanjappa, Vishalakshi

AU - Balakrishnan, Lavanya

AU - Radhakrishnan, Aneesha

AU - Thomas, Joji Kurian

AU - Sharma, Jyoti

AU - Tian, Maozhen

AU - Palapetta, Shyam Mohan

AU - Subbannayya, Tejaswini

AU - Sekhar, Nirujogi Raja

AU - Muthusamy, Babylakshmi

AU - Goel, Renu

AU - Subbannayya, Yashwanth

AU - Telikicherla, Deepthi

AU - Bhattacharjee, Mitali

AU - Pinto, Sneha M.

AU - Syed, Nazia

AU - Srikanth, Manda Srinivas

AU - Sathe, Gajanan J.

AU - Ahmad, Sartaj

AU - Chavan, Sandip N.

AU - Kumar, Ghantasala S. Sameer

AU - Marimuthu, Arivusudar

AU - Prasad, T. S. K.

AU - Harsha, H. C.

AU - Rahiman, B. Abdul

AU - Ohara, Osamu

AU - Bader, Gary D.

AU - Mohan, S. Sujatha

AU - Schiemann, William P.

AU - Pandey, Akhilesh

PY - 2011

Y1 - 2011

N2 - We previously developed NetPath as a resource for comprehensive manually curated signal transduction pathways. The pathways in NetPath contain a large number of molecules and reactions which can sometimes be difficult to visualize or interpret given their complexity. To overcome this potential limitation, we have developed a set of more stringent curation and inclusion criteria for pathway reactions to generate high-confidence signaling maps. NetSlim is a new resource that contains this 'core' subset of reactions for each pathway for easy visualization and manipulation. The pathways in NetSlim are freely available at http://www.netpath.org/netslim.

AB - We previously developed NetPath as a resource for comprehensive manually curated signal transduction pathways. The pathways in NetPath contain a large number of molecules and reactions which can sometimes be difficult to visualize or interpret given their complexity. To overcome this potential limitation, we have developed a set of more stringent curation and inclusion criteria for pathway reactions to generate high-confidence signaling maps. NetSlim is a new resource that contains this 'core' subset of reactions for each pathway for easy visualization and manipulation. The pathways in NetSlim are freely available at http://www.netpath.org/netslim.

UR - http://www.scopus.com/inward/record.url?scp=84864041694&partnerID=8YFLogxK

U2 - 10.1093/database/bar032

DO - 10.1093/database/bar032

M3 - Article

C2 - 21959865

AN - SCOPUS:84864041694

SN - 1758-0463

VL - 2011

JO - Database

JF - Database

M1 - bar032

ER -

NetSlim: High-confidence curated signaling maps

Abstract

ASJC Scopus subject areas

Access to Document

Other files and links

Fingerprint

Cite this