OME-NGFF: a next-generation file format for expanding bioimaging data access strategies

Josh Moore, Christopher Allan, Sebastien Besson, Jean-Marie Burel, Erin Diel, David Gault, Kevin Kozlowski, Dominik Lindner, Melissa Linkert, Trevor Manz, William Moore, Constantin Pape, Christian Tischer, Jason R. Swedlow (Lead / Corresponding author)

Research output: Contribution to journalArticlepeer-review

2 Citations (Scopus)
3 Downloads (Pure)

Abstract

The rapid pace of innovation in biological imaging and the diversity of its applications have prevented the establishment of a community-agreed standardized data format. We propose that complementing established open formats such as OME-TIFF and HDF5 with a next-generation file format such as Zarr will satisfy the majority of use cases in bioimaging. Critically, a common metadata format used in all these vessels can deliver truly findable, accessible, interoperable and reusable bioimaging data.

Original languageEnglish
Pages (from-to)1496-1498
Number of pages3
JournalNature Methods
Volume18
Early online date29 Nov 2021
DOIs
Publication statusPublished - Dec 2021

Keywords

  • Computational platforms and environments
  • Data publication and archiving

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