OMERO and Bio-Formats 5: flexible access to large bioimaging datasets at scale

Josh Moore; Melissa Linkert; Colin Blackburn; Mark Carroll; Gus Ferguson; Helen Flynn; Kenneth Gillen; Roger Leigh; Simon Li; Dominik Lindner; William Moore; Andrew Patterson; Blazej Pindelski; Balaji Ramalingam; Emil Rozbicki; Aleksandra Tarkowska; Petr Walczysko; Chris Allan; Jean-Marie Burel; Jason R. Swedlow

doi:10.1117/12.2086370

OMERO and Bio-Formats 5: flexible access to large bioimaging datasets at scale

Josh Moore, Melissa Linkert, Colin Blackburn, Mark Carroll, Gus Ferguson, Helen Flynn, Kenneth Gillen, Roger Leigh, Simon Li, Dominik Lindner, William Moore, Andrew Patterson, Blazej Pindelski, Balaji Ramalingam, Emil Rozbicki, Aleksandra Tarkowska, Petr Walczysko, Chris Allan, Jean-Marie Burel, Jason R. Swedlow

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

24 Citations (Scopus)

Original language	English
Title of host publication	Medical Imaging 2015
Subtitle of host publication	Image Processing
Editors	Sébastien Ourselin, Martin A. Styner
Place of Publication	Bellingham
Publisher	SPIE-International Society for Optical Engineering
DOIs	https://doi.org/10.1117/12.2086370
Publication status	Published - 2015
Event	SPIE Medical Imaging 2015: Image Processing - Renaissance Orlando at SeaWorld, Orlando, United States Duration: 24 Feb 2015 → 26 Feb 2015 http://spie.org/MI/conferencedetails/medical-image-processing

Publication series

Name	Proceedings of SPIE
Publisher	SPIE
Volume	9413

Conference

Conference	SPIE Medical Imaging 2015: Image Processing
Country/Territory	United States
City	Orlando
Period	24/02/15 → 26/02/15
Internet address	http://spie.org/MI/conferencedetails/medical-image-processing

Access to Document

10.1117/12.2086370

http://spie.org/MI/conferencedetails/medical-image-processing

Expanded Metadatas Support in the Open Microscopy Environments Bio-Formats and OMERO Data Applications
Swedlow, J. (Investigator)
Biotechnology and Biological Sciences Research Council
31/08/14 → 28/02/18
Project: Research

Cite this

Moore, J., Linkert, M., Blackburn, C., Carroll, M., Ferguson, G., Flynn, H., Gillen, K., Leigh, R., Li, S., Lindner, D., Moore, W., Patterson, A., Pindelski, B., Ramalingam, B., Rozbicki, E., Tarkowska, A., Walczysko, P., Allan, C., Burel, J.-M., & Swedlow, J. R. (2015). OMERO and Bio-Formats 5: flexible access to large bioimaging datasets at scale. In S. Ourselin, & M. A. Styner (Eds.), Medical Imaging 2015: Image Processing Article 941307 (Proceedings of SPIE; Vol. 9413). SPIE-International Society for Optical Engineering. https://doi.org/10.1117/12.2086370

@inproceedings{6d3fc109d526432e9db6c4fb78390a1d,

title = "OMERO and Bio-Formats 5: flexible access to large bioimaging datasets at scale",

author = "Josh Moore and Melissa Linkert and Colin Blackburn and Mark Carroll and Gus Ferguson and Helen Flynn and Kenneth Gillen and Roger Leigh and Simon Li and Dominik Lindner and William Moore and Andrew Patterson and Blazej Pindelski and Balaji Ramalingam and Emil Rozbicki and Aleksandra Tarkowska and Petr Walczysko and Chris Allan and Jean-Marie Burel and Swedlow, {Jason R.}",

year = "2015",

doi = "10.1117/12.2086370",

language = "English",

series = "Proceedings of SPIE",

publisher = "SPIE-International Society for Optical Engineering",

editor = "Ourselin, {S{\'e}bastien } and Styner, {Martin A. }",

booktitle = "Medical Imaging 2015",

note = "SPIE Medical Imaging 2015: Image Processing ; Conference date: 24-02-2015 Through 26-02-2015",

url = "http://spie.org/MI/conferencedetails/medical-image-processing",

}

Moore, J, Linkert, M, Blackburn, C, Carroll, M, Ferguson, G, Flynn, H, Gillen, K, Leigh, R, Li, S , Lindner, D , Moore, W, Patterson, A, Pindelski, B, Ramalingam, B, Rozbicki, E, Tarkowska, A, Walczysko, P, Allan, C, Burel, J-M & Swedlow, JR 2015, OMERO and Bio-Formats 5: flexible access to large bioimaging datasets at scale. in S Ourselin & MA Styner (eds), Medical Imaging 2015: Image Processing., 941307, Proceedings of SPIE, vol. 9413, SPIE-International Society for Optical Engineering, Bellingham, SPIE Medical Imaging 2015: Image Processing, Orlando, United States, 24/02/15. https://doi.org/10.1117/12.2086370

OMERO and Bio-Formats 5: flexible access to large bioimaging datasets at scale. / Moore, Josh; Linkert, Melissa; Blackburn, Colin et al.
Medical Imaging 2015: Image Processing. ed. / Sébastien Ourselin; Martin A. Styner. Bellingham: SPIE-International Society for Optical Engineering, 2015. 941307 (Proceedings of SPIE; Vol. 9413).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

TY - GEN

T1 - OMERO and Bio-Formats 5

T2 - SPIE Medical Imaging 2015: Image Processing

AU - Moore, Josh

AU - Linkert, Melissa

AU - Blackburn, Colin

AU - Carroll, Mark

AU - Ferguson, Gus

AU - Flynn, Helen

AU - Gillen, Kenneth

AU - Leigh, Roger

AU - Li, Simon

AU - Lindner, Dominik

AU - Moore, William

AU - Patterson, Andrew

AU - Pindelski, Blazej

AU - Ramalingam, Balaji

AU - Rozbicki, Emil

AU - Tarkowska, Aleksandra

AU - Walczysko, Petr

AU - Allan, Chris

AU - Burel, Jean-Marie

AU - Swedlow, Jason R.

PY - 2015

Y1 - 2015

U2 - 10.1117/12.2086370

DO - 10.1117/12.2086370

M3 - Conference contribution

T3 - Proceedings of SPIE

BT - Medical Imaging 2015

A2 - Ourselin, Sébastien

A2 - Styner, Martin A.

PB - SPIE-International Society for Optical Engineering

CY - Bellingham

Y2 - 24 February 2015 through 26 February 2015

ER -

OMERO and Bio-Formats 5: flexible access to large bioimaging datasets at scale

Publication series

Conference

Access to Document

Projects

Expanded Metadatas Support in the Open Microscopy Environments Bio-Formats and OMERO Data Applications

Cite this