Publishing and sharing multi-dimensional image data with OMERO

Jean-Marie Burel, Sebastien Besson, Colin Blackburn, Mark Carroll, Richard Ferguson, Helen Flynn, Kenneth Gillen, Roger Leigh, Simon Li, Dominik Lindner, Melissa Linkert, William J. Moore, Balaji Ramalingam, Emil Rozbicki, Aleksandra Tarkowska, Petr Walczysko, Chris Allan, Josh Moore, Jason R. Swedlow (Lead / Corresponding author)

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Abstract

Imaging data are used in the life and biomedical sciences to measure the molecular and structural composition and dynamics of cells, tissues and organisms. Datasets range in size from megabytes (MB) to terabytes (TB) and usually contain a combination of binary pixel data and metadata that describe the acquisition process and any derived results. The OMERO image data management platform allows users to securely share image datasets according to specific permissions levels: data can be held privately, shared with a set of colleagues, or made available via a public URL. Users control access by assigning data to specific Groups with defined membership and access rights. OMERO’s Permission system supports simple data sharing in a lab, collaborative data analysis, and even teaching environments. OMERO software is open source and released by the OME
Original languageEnglish
Pages (from-to)441-447
Number of pages7
JournalMammalian Genome : Official Journal of the International Mammalian Genome Society
Volume26
Issue number9
Early online date30 Jul 2015
DOIs
Publication statusPublished - Oct 2015

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Burel, Jean-Marie ; Besson, Sebastien ; Blackburn, Colin ; Carroll, Mark ; Ferguson, Richard ; Flynn, Helen ; Gillen, Kenneth ; Leigh, Roger ; Li, Simon ; Lindner, Dominik ; Linkert, Melissa ; Moore, William J. ; Ramalingam, Balaji ; Rozbicki, Emil ; Tarkowska, Aleksandra ; Walczysko, Petr ; Allan, Chris ; Moore, Josh ; Swedlow, Jason R. / Publishing and sharing multi-dimensional image data with OMERO. In: Mammalian Genome : Official Journal of the International Mammalian Genome Society. 2015 ; Vol. 26, No. 9. pp. 441-447.
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Publishing and sharing multi-dimensional image data with OMERO. / Burel, Jean-Marie; Besson, Sebastien; Blackburn, Colin; Carroll, Mark; Ferguson, Richard; Flynn, Helen; Gillen, Kenneth; Leigh, Roger; Li, Simon; Lindner, Dominik; Linkert, Melissa; Moore, William J.; Ramalingam, Balaji; Rozbicki, Emil; Tarkowska, Aleksandra; Walczysko, Petr; Allan, Chris; Moore, Josh; Swedlow, Jason R. (Lead / Corresponding author).

In: Mammalian Genome : Official Journal of the International Mammalian Genome Society, Vol. 26, No. 9, 10.2015, p. 441-447.

Research output: Contribution to journalArticle

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AU - Leigh, Roger

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AU - Moore, Josh

AU - Swedlow, Jason R.

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