QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy

Ulrike Boehm; Glyn Nelson; Claire M. Brown; Steve Bagley; Peter Bajcsy; Johanna Bischof; Aurelien Dauphin; Ian M. Dobbie; John E. Eriksson; Orestis Faklaris; Julia Fernandez-Rodriguez; Alexia Ferrand; Laurent Gelman; Ali Gheisari; Hella Hartmann; Christian Kukat; Alex Laude; Miso Mitkovski; Sebastian Munck; Alison J. North; Tobias M. Rasse; Ute Resch-Genger; Lucas C. Schuetz; Arne Seitz; Caterina Strambio-De-Castillia; Jason R. Swedlow; Roland Nitschke

doi:10.1038/s41592-021-01162-y

QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy

Ulrike Boehm
, Glyn Nelson
, Claire M. Brown
, Steve Bagley
, Peter Bajcsy
, Johanna Bischof
, Aurelien Dauphin
, Ian M. Dobbie
, John E. Eriksson
, Orestis Faklaris
, Julia Fernandez-Rodriguez
, Alexia Ferrand
, Laurent Gelman
, Ali Gheisari
, Hella Hartmann
, Christian Kukat
, Alex Laude
, Miso Mitkovski
, Sebastian Munck
, Alison J. North

Tobias M. Rasse, Ute Resch-Genger, Lucas C. Schuetz, Arne Seitz, Caterina Strambio-De-Castillia, Jason R. Swedlow, Roland Nitschke (Lead / Corresponding author)

School of Life Sciences

Research output: Contribution to journal › Article › peer-review

59 Citations (Scopus)

Abstract

The community-driven initiative Quality Assessment and Reproducibility for Instruments & Images in Light Microscopy (QUAREP-LiMi) wants to improve reproducibility for light microscopy image data through quality control (QC) management of instruments and images. It aims for a common set of QC guidelines for hardware calibration and image acquisition, management and analysis.

Original language	English
Pages (from-to)	1423-1426
Number of pages	4
Journal	Nature Methods
Volume	18
Early online date	21 May 2021
DOIs	https://doi.org/10.1038/s41592-021-01162-y
Publication status	Published - Dec 2021

Keywords

Microscopy
Research data

ASJC Scopus subject areas

Biotechnology
Biochemistry
Molecular Biology
Cell Biology

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10.1038/s41592-021-01162-y

Cite this

Boehm, U., Nelson, G., Brown, C. M., Bagley, S., Bajcsy, P., Bischof, J., Dauphin, A., Dobbie, I. M., Eriksson, J. E., Faklaris, O., Fernandez-Rodriguez, J., Ferrand, A., Gelman, L., Gheisari, A., Hartmann, H., Kukat, C., Laude, A., Mitkovski, M., Munck, S., ... Nitschke, R. (2021). QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy. Nature Methods, 18, 1423-1426. https://doi.org/10.1038/s41592-021-01162-y

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abstract = "The community-driven initiative Quality Assessment and Reproducibility for Instruments \& Images in Light Microscopy (QUAREP-LiMi) wants to improve reproducibility for light microscopy image data through quality control (QC) management of instruments and images. It aims for a common set of QC guidelines for hardware calibration and image acquisition, management and analysis.",

keywords = "Microscopy, Research data",

author = "Ulrike Boehm and Glyn Nelson and Brown, \{Claire M.\} and Steve Bagley and Peter Bajcsy and Johanna Bischof and Aurelien Dauphin and Dobbie, \{Ian M.\} and Eriksson, \{John E.\} and Orestis Faklaris and Julia Fernandez-Rodriguez and Alexia Ferrand and Laurent Gelman and Ali Gheisari and Hella Hartmann and Christian Kukat and Alex Laude and Miso Mitkovski and Sebastian Munck and North, \{Alison J.\} and Rasse, \{Tobias M.\} and Ute Resch-Genger and Schuetz, \{Lucas C.\} and Arne Seitz and Caterina Strambio-De-Castillia and Swedlow, \{Jason R.\} and Roland Nitschke",

note = "C.M.B has been funded in part by grant number 2020-225398 from the Chan Zuckerberg Initiative DAF, an advised fund of Silicon Valley Community Foundation. The work of C.S.-D.-C. was supported by NIH grant \# U01CA200059 and by grant \#2019-198155 (5022) by the Chan Zuckerberg Initiative as part of their Imaging Scientist Program. R.N. was funded by Deutsche Forschungsgemeinschaft (German Research Foundation) grant number Ni 451/9-1-MIAP-Freiburg. ",

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doi = "10.1038/s41592-021-01162-y",

language = "English",

volume = "18",

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Boehm, U, Nelson, G, Brown, CM, Bagley, S, Bajcsy, P, Bischof, J, Dauphin, A, Dobbie, IM, Eriksson, JE, Faklaris, O, Fernandez-Rodriguez, J, Ferrand, A, Gelman, L, Gheisari, A, Hartmann, H, Kukat, C, Laude, A, Mitkovski, M, Munck, S, North, AJ, Rasse, TM, Resch-Genger, U, Schuetz, LC, Seitz, A, Strambio-De-Castillia, C, Swedlow, JR & Nitschke, R 2021, 'QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy', Nature Methods, vol. 18, pp. 1423-1426. https://doi.org/10.1038/s41592-021-01162-y

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T2 - a community endeavor to advance quality assessment and reproducibility in light microscopy

AU - Boehm, Ulrike

AU - Nelson, Glyn

AU - Brown, Claire M.

AU - Bagley, Steve

AU - Bajcsy, Peter

AU - Bischof, Johanna

AU - Dauphin, Aurelien

AU - Dobbie, Ian M.

AU - Eriksson, John E.

AU - Faklaris, Orestis

AU - Fernandez-Rodriguez, Julia

AU - Ferrand, Alexia

AU - Gelman, Laurent

AU - Gheisari, Ali

AU - Hartmann, Hella

AU - Kukat, Christian

AU - Laude, Alex

AU - Mitkovski, Miso

AU - Munck, Sebastian

AU - North, Alison J.

AU - Rasse, Tobias M.

AU - Resch-Genger, Ute

AU - Schuetz, Lucas C.

AU - Seitz, Arne

AU - Strambio-De-Castillia, Caterina

AU - Swedlow, Jason R.

AU - Nitschke, Roland

N1 - C.M.B has been funded in part by grant number 2020-225398 from the Chan Zuckerberg Initiative DAF, an advised fund of Silicon Valley Community Foundation. The work of C.S.-D.-C. was supported by NIH grant # U01CA200059 and by grant #2019-198155 (5022) by the Chan Zuckerberg Initiative as part of their Imaging Scientist Program. R.N. was funded by Deutsche Forschungsgemeinschaft (German Research Foundation) grant number Ni 451/9-1-MIAP-Freiburg.

PY - 2021/12

Y1 - 2021/12

N2 - The community-driven initiative Quality Assessment and Reproducibility for Instruments & Images in Light Microscopy (QUAREP-LiMi) wants to improve reproducibility for light microscopy image data through quality control (QC) management of instruments and images. It aims for a common set of QC guidelines for hardware calibration and image acquisition, management and analysis.

AB - The community-driven initiative Quality Assessment and Reproducibility for Instruments & Images in Light Microscopy (QUAREP-LiMi) wants to improve reproducibility for light microscopy image data through quality control (QC) management of instruments and images. It aims for a common set of QC guidelines for hardware calibration and image acquisition, management and analysis.

KW - Microscopy

KW - Research data

UR - https://www.scopus.com/pages/publications/85106212581

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DO - 10.1038/s41592-021-01162-y

M3 - Article

C2 - 34021279

SN - 1548-7091

VL - 18

SP - 1423

EP - 1426

JO - Nature Methods

JF - Nature Methods

ER -

QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy

Abstract

Keywords

ASJC Scopus subject areas

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