Projects per year
Aphids are a diverse group of taxa that contain agronomically important species, which vary in their host range and ability to infest crop plants. The genome evolution underlying agriculturally important aphid traits is not well understood. We generated draft genome assemblies for two aphid species: Myzus cerasi (black cherry aphid), and the cereal specialist Rhopalosiphum padi. Using a de novo gene prediction pipeline on both these, and three additional aphid genome assemblies (Acyrthosiphon pisum, D. noxia and M. persicae), we show that aphid genomes consistently encode similar gene numbers. We compare gene content, gene duplication, synteny, and putative effector repertoires between these five species to understand the genome evolution of globally important plant parasites. Aphid genomes show signs of relatively distant gene duplication, and substantial, relatively recent, gene birth. Putative effector repertoires, originating from duplicated and other loci have an unusual genomic organisation and evolutionary history. We identify a highly conserved effector-pair that is tightly physically-linked in the genomes of all aphid species tested. In R. padi, this effector pair is tightly transcriptionally-linked, and shares an unknown transcriptional control mechanism with a subset of approximately 50 other putative effectors and secretory proteins. This study extends our current knowledge on the evolution of aphid genomes and reveals evidence for an as of yet unknown shared control mechanism, which underlies effector expression, and ultimately plant parasitism.
|Number of pages||18|
|Journal||Genome Biology and Evolution|
|Early online date||25 Aug 2018|
|Publication status||Published - 1 Oct 2018|
- genome evolution
- shared transcriptional control
- horizontal gene transfer
ASJC Scopus subject areas
- Ecology, Evolution, Behavior and Systematics
FingerprintDive into the research topics of 'Shared transcriptional control and disparate gain and loss of aphid parasitism genes'. Together they form a unique fingerprint.
- 1 Finished
A Synthetic Biology Approach to Develop Durable Disease Resistance in Crops (Anniversary Fellowship)
Birch, P. & Eves-van den Akker, S.
Biotechnology and Biological Sciences Research Council
2/02/15 → 1/04/18
Understanding molecular events during barley aphid interactionsAuthor: Escudero Martinez, C. M., 2018
Supervisor: Bos, J. (Supervisor) & Jones, J. (Supervisor)
Student thesis: Doctoral Thesis › Doctor of PhilosophyFile