Tablet: visualizing next-generation sequence assemblies and mappings

Iain Milne; Micha Bayer; Gordon Stephen; Linda Cardle; David Marshall

doi:10.1007/978-1-4939-3167-5_14

Tablet: visualizing next-generation sequence assemblies and mappings

Iain Milne (Lead / Corresponding author), Micha Bayer, Gordon Stephen, Linda Cardle, David Marshall

Plant Sciences

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

35 Citations (Scopus)

Abstract

This chapter is designed to be a practical guide to using Tablet for the visualization of next/second-generation (NGS) sequencing data. NGS data is being produced more frequently and in greater data volumes every year. As such, it is increasingly important to have tools which enable biologists and bioinformaticians to understand and gain key insights into their data. Visualization can play a key role in the exploration of such data as well as aid in the visual validation of sequence assemblies and features such as single nucleotide polymorphisms (SNPs). We aim to show several use cases which demonstrate Tablet's ability to visually highlight various situations of interest which can arise in NGS data.

Original language	English
Title of host publication	Plant bioinformatics
Subtitle of host publication	methods and protocols
Editors	David Edwards
Place of Publication	New York
Publisher	Springer
Pages	253-268
Number of pages	16
ISBN (Electronic)	9781493931675
ISBN (Print)	9781493931668
DOIs	https://doi.org/10.1007/978-1-4939-3167-5_14
Publication status	Published - 2016

Publication series

Name	Methods in molecular biology
Publisher	Springer
Volume	1374
ISSN (Print)	1064-3745

Keywords

Chromosome mapping
Computational biology
Genomics
High-throughput nucleotide Sequencing
Sequence analysis, DNA
Software
Web browser

Access to Document

10.1007/978-1-4939-3167-5_14

Cite this

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Tablet: visualizing next-generation sequence assemblies and mappings. / Milne, Iain (Lead / Corresponding author); Bayer, Micha; Stephen, Gordon et al.
Plant bioinformatics: methods and protocols. ed. / David Edwards. New York: Springer , 2016. p. 253-268 (Methods in molecular biology; Vol. 1374).

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

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KW - Computational biology

KW - Genomics

KW - High-throughput nucleotide Sequencing

KW - Sequence analysis, DNA

KW - Software

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Tablet: visualizing next-generation sequence assemblies and mappings

Abstract

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Keywords

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