The Encyclopedia of Proteome Dynamics: The KinoViewer

Alejandro Brenes Murillo; Angus Lamond

doi:10.1093/bioinformatics/bty823

The Encyclopedia of Proteome Dynamics: The KinoViewer

Alejandro Brenes Murillo, Angus Lamond

Research output: Contribution to journal › Article › peer-review

6 Citations (Scopus)

139 Downloads (Pure)

Abstract

Summary: The Encyclopedia of Proteome Dynamics (EPD) ‘KinoViewer’ is an interactive data visualisation tool designed for analysis and exploration of both protein and transcript data, showing expression of kinase genes in either Human or Mouse cells and tissues. The KinoViewer provides a comprehensive, updated graphical display of all human/mouse kinases and an open access analysis tool for the community with a user-friendly graphical interface.

Availability and Implementation: The KinoViewer is based on a manually drawn SVG, which is utilised with D3.js to create a dynamic visualisation. It can be accessed at: https://peptracker.com/epd/analytics/. The KinoViewer is currently only accessible through the EPD, it is open access and can be used either to view internal datasets, or used to upload and visualise external user datasets.

Original language	English
Article number	bty823
Pages (from-to)	1441-1442
Number of pages	2
Journal	Bioinformatics
Volume	35
Issue number	8
Early online date	19 Sept 2018
DOIs	https://doi.org/10.1093/bioinformatics/bty823
Publication status	Published - 15 Apr 2019

Access to Document

10.1093/bioinformatics/bty823Licence: CC BY

Final Published VersionFinal published version, 1.37 MBLicence: CC BY

Multidimensional Proteomic Analysis of Metabolic Stress & Cellular Phenotypes (Strategic Grant)
Cantrell, D. (Investigator) & Lamond, A. (Investigator)
1/01/15 → 31/12/19
Project: Research

Towards population-scale proteomics to study molecular phenotypes in health and disease
Brenes Murillo, A. (Author), Cantrell, D. (Supervisor) & Lamond, A. (Supervisor), 2023
Student thesis: Doctoral Thesis › Doctor of Philosophy

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Lamond, Angus
- Molecular Cell and Developmental Biology - Professor of Biochemistry
Person: Academic

Cite this

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title = "The Encyclopedia of Proteome Dynamics: The KinoViewer",

abstract = "Summary: The Encyclopedia of Proteome Dynamics (EPD) {\textquoteleft}KinoViewer{\textquoteright} is an interactive data visualisation tool designed for analysis and exploration of both protein and transcript data, showing expression of kinase genes in either Human or Mouse cells and tissues. The KinoViewer provides a comprehensive, updated graphical display of all human/mouse kinases and an open access analysis tool for the community with a user-friendly graphical interface. Availability and Implementation: The KinoViewer is based on a manually drawn SVG, which is utilised with D3.js to create a dynamic visualisation. It can be accessed at: https://peptracker.com/epd/analytics/. The KinoViewer is currently only accessible through the EPD, it is open access and can be used either to view internal datasets, or used to upload and visualise external user datasets.",

author = "{Brenes Murillo}, Alejandro and Angus Lamond",

note = "This work was supported by the Wellcome Trust [grant numbers 073980/Z/03/Z, 105024/Z/14/Z].",

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AB - Summary: The Encyclopedia of Proteome Dynamics (EPD) ‘KinoViewer’ is an interactive data visualisation tool designed for analysis and exploration of both protein and transcript data, showing expression of kinase genes in either Human or Mouse cells and tissues. The KinoViewer provides a comprehensive, updated graphical display of all human/mouse kinases and an open access analysis tool for the community with a user-friendly graphical interface. Availability and Implementation: The KinoViewer is based on a manually drawn SVG, which is utilised with D3.js to create a dynamic visualisation. It can be accessed at: https://peptracker.com/epd/analytics/. The KinoViewer is currently only accessible through the EPD, it is open access and can be used either to view internal datasets, or used to upload and visualise external user datasets.

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DO - 10.1093/bioinformatics/bty823

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The Encyclopedia of Proteome Dynamics: The KinoViewer

Abstract

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Projects

Multidimensional Proteomic Analysis of Metabolic Stress & Cellular Phenotypes (Strategic Grant)

Student theses

Towards population-scale proteomics to study molecular phenotypes in health and disease

Profiles

Lamond, Angus

Cite this