The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging

TY - JOUR

T1 - The Open Microscopy Environment (OME) Data Model and XML file

T2 - open tools for informatics and quantitative analysis in biological imaging

AU - Goldberg, Ilya G

AU - Allan, Chris

AU - Burel, Jean-Marie

AU - Creager, Doug

AU - Falconi, Andrea

AU - Hochheiser, Harry

AU - Johnston, Josiah

AU - Mellen, Jeff

AU - Sorger, Peter K

AU - Swedlow, Jason R

PY - 2005

Y1 - 2005

N2 - The Open Microscopy Environment (OME) defines a data model and a software implementation to serve as an informatics framework for imaging in biological microscopy experiments, including representation of acquisition parameters, annotations and image analysis results. OME is designed to support high-content cell-based screening as well as traditional image analysis applications. The OME Data Model, expressed in Extensible Markup Language (XML) and realized in a traditional database, is both extensible and self-describing, allowing it to meet emerging imaging and analysis needs.

AB - The Open Microscopy Environment (OME) defines a data model and a software implementation to serve as an informatics framework for imaging in biological microscopy experiments, including representation of acquisition parameters, annotations and image analysis results. OME is designed to support high-content cell-based screening as well as traditional image analysis applications. The OME Data Model, expressed in Extensible Markup Language (XML) and realized in a traditional database, is both extensible and self-describing, allowing it to meet emerging imaging and analysis needs.

U2 - 10.1186/gb-2005-6-5-r47

DO - 10.1186/gb-2005-6-5-r47

M3 - Article

C2 - 15892875

SN - 1474-760X

VL - 6

JO - Genome Biology

JF - Genome Biology

IS - 5

M1 - R47

ER -