The potential of human leukocyte antigen alleles to assist with multiple-contributor DNA mixtures: Proof of concept study

TY - JOUR

T1 - The potential of human leukocyte antigen alleles to assist with multiple-contributor DNA mixtures

T2 - Proof of concept study

AU - Kuffel, Aga

AU - Cole, Christian

AU - Mallinder, Benjamin

AU - Nic Daeid, Niamh

AU - Gray, Alexander

N1 - © 2024 The Authors.

PY - 2024/9

Y1 - 2024/9

N2 - One of the most challenging issues still present in forensic DNA analysis is identifying individuals in samples containing DNA from multiple contributors. The introduction of further novel identification markers may be a useful tool in the deconvolution of such DNA mixtures. In this study, we investigated the potential of alleles from the human leukocyte antigen system (HLA) to aid in identifying individuals in complex, multiple-donor DNA samples. The most advantageous characteristic of the HLA complex is its polymorphism in the human genome. A 22-loci multiplex with HLA markers was designed and then applied to two-, three- and four-person DNA mixtures. The results of the conducted experiments demonstrated that the identification of individuals in multiple contributor samples with the help of HLA markers is possible, however, it is clear that the reliability of the method is heavily dependent on the number of unique alleles for each individual in the analysed mixture. In order to compare this novel approach against the already established method, the same group of reference and multiple-contributor samples was analysed with a commonly used set of STR markers. This proof-of-concept research shows the importance of examining alternative solutions to the current deconvolution challenge in forensic DNA profiling.

AB - One of the most challenging issues still present in forensic DNA analysis is identifying individuals in samples containing DNA from multiple contributors. The introduction of further novel identification markers may be a useful tool in the deconvolution of such DNA mixtures. In this study, we investigated the potential of alleles from the human leukocyte antigen system (HLA) to aid in identifying individuals in complex, multiple-donor DNA samples. The most advantageous characteristic of the HLA complex is its polymorphism in the human genome. A 22-loci multiplex with HLA markers was designed and then applied to two-, three- and four-person DNA mixtures. The results of the conducted experiments demonstrated that the identification of individuals in multiple contributor samples with the help of HLA markers is possible, however, it is clear that the reliability of the method is heavily dependent on the number of unique alleles for each individual in the analysed mixture. In order to compare this novel approach against the already established method, the same group of reference and multiple-contributor samples was analysed with a commonly used set of STR markers. This proof-of-concept research shows the importance of examining alternative solutions to the current deconvolution challenge in forensic DNA profiling.

KW - Human leukocyte antigens

KW - DNA mixtures

KW - Massively parallel sequencing

KW - DNA analysis

KW - Novel forensic DNA markers

UR - https://www.scopus.com/pages/publications/85200802409

U2 - 10.1016/j.scijus.2024.08.001

DO - 10.1016/j.scijus.2024.08.001

M3 - Article

C2 - 39277335

SN - 1355-0306

VL - 64

SP - 533

EP - 542

JO - Science & Justice

JF - Science & Justice

IS - 5

ER -