The Scottish Structural Proteomics Facility: targets, methods and outputs

Muse Oke, Lester G Carter, Kenneth A Johnson, Huanting Liu, Stephen A McMahon, Xuan Yan, Melina Kerou, Nadine D Weikart, Nadia Kadi, Md Arif Sheikh, Stefan Schmelz, Mark Dorward, Michal Zawadzki, Christopher Cozens, Helen Falconer, Helen Powers, Ian M Overton, C A Johannes van Niekerk, Xu Peng, Prakash PatelRoger A Garrett, David Prangishvili, Catherine H Botting, Peter J Coote, David T F Dryden, Geoffrey J Barton, Ulrich Schwarz-Linek, Gregory L Challis, Garry L Taylor, Malcolm F White, James H Naismith

    Research output: Contribution to journalArticle

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    Abstract

    The Scottish Structural Proteomics Facility was funded to develop a laboratory scale approach to high throughput structure determination. The effort was successful in that over 40 structures were determined. These structures and the methods harnessed to obtain them are reported here. This report reflects on the value of automation but also on the continued requirement for a high degree of scientific and technical expertise. The efficiency of the process poses challenges to the current paradigm of structural analysis and publication. In the 5 year period we published ten peer-reviewed papers reporting structural data arising from the pipeline. Nevertheless, the number of structures solved exceeded our ability to analyse and publish each new finding. By reporting the experimental details and depositing the structures we hope to maximize the impact of the project by allowing others to follow up the relevant biology.
    Original languageEnglish
    Pages (from-to)167-80
    Number of pages14
    JournalJournal of Structural and Functional Genomics
    Volume11
    Issue number2
    DOIs
    Publication statusPublished - 2010

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    Professional Competence
    Automation
    Structural analysis
    Proteomics
    Publications
    Research Design
    Pipelines
    Throughput

    Cite this

    Oke, M., Carter, L. G., Johnson, K. A., Liu, H., McMahon, S. A., Yan, X., ... Naismith, J. H. (2010). The Scottish Structural Proteomics Facility: targets, methods and outputs. Journal of Structural and Functional Genomics, 11(2), 167-80. https://doi.org/10.1007/s10969-010-9090-y
    Oke, Muse ; Carter, Lester G ; Johnson, Kenneth A ; Liu, Huanting ; McMahon, Stephen A ; Yan, Xuan ; Kerou, Melina ; Weikart, Nadine D ; Kadi, Nadia ; Sheikh, Md Arif ; Schmelz, Stefan ; Dorward, Mark ; Zawadzki, Michal ; Cozens, Christopher ; Falconer, Helen ; Powers, Helen ; Overton, Ian M ; van Niekerk, C A Johannes ; Peng, Xu ; Patel, Prakash ; Garrett, Roger A ; Prangishvili, David ; Botting, Catherine H ; Coote, Peter J ; Dryden, David T F ; Barton, Geoffrey J ; Schwarz-Linek, Ulrich ; Challis, Gregory L ; Taylor, Garry L ; White, Malcolm F ; Naismith, James H. / The Scottish Structural Proteomics Facility : targets, methods and outputs. In: Journal of Structural and Functional Genomics. 2010 ; Vol. 11, No. 2. pp. 167-80.
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    abstract = "The Scottish Structural Proteomics Facility was funded to develop a laboratory scale approach to high throughput structure determination. The effort was successful in that over 40 structures were determined. These structures and the methods harnessed to obtain them are reported here. This report reflects on the value of automation but also on the continued requirement for a high degree of scientific and technical expertise. The efficiency of the process poses challenges to the current paradigm of structural analysis and publication. In the 5 year period we published ten peer-reviewed papers reporting structural data arising from the pipeline. Nevertheless, the number of structures solved exceeded our ability to analyse and publish each new finding. By reporting the experimental details and depositing the structures we hope to maximize the impact of the project by allowing others to follow up the relevant biology.",
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    Oke, M, Carter, LG, Johnson, KA, Liu, H, McMahon, SA, Yan, X, Kerou, M, Weikart, ND, Kadi, N, Sheikh, MA, Schmelz, S, Dorward, M, Zawadzki, M, Cozens, C, Falconer, H, Powers, H, Overton, IM, van Niekerk, CAJ, Peng, X, Patel, P, Garrett, RA, Prangishvili, D, Botting, CH, Coote, PJ, Dryden, DTF, Barton, GJ, Schwarz-Linek, U, Challis, GL, Taylor, GL, White, MF & Naismith, JH 2010, 'The Scottish Structural Proteomics Facility: targets, methods and outputs', Journal of Structural and Functional Genomics, vol. 11, no. 2, pp. 167-80. https://doi.org/10.1007/s10969-010-9090-y

    The Scottish Structural Proteomics Facility : targets, methods and outputs. / Oke, Muse; Carter, Lester G; Johnson, Kenneth A; Liu, Huanting; McMahon, Stephen A; Yan, Xuan; Kerou, Melina; Weikart, Nadine D; Kadi, Nadia; Sheikh, Md Arif; Schmelz, Stefan; Dorward, Mark; Zawadzki, Michal; Cozens, Christopher; Falconer, Helen; Powers, Helen; Overton, Ian M; van Niekerk, C A Johannes; Peng, Xu; Patel, Prakash; Garrett, Roger A; Prangishvili, David; Botting, Catherine H; Coote, Peter J; Dryden, David T F; Barton, Geoffrey J; Schwarz-Linek, Ulrich; Challis, Gregory L; Taylor, Garry L; White, Malcolm F; Naismith, James H.

    In: Journal of Structural and Functional Genomics, Vol. 11, No. 2, 2010, p. 167-80.

    Research output: Contribution to journalArticle

    TY - JOUR

    T1 - The Scottish Structural Proteomics Facility

    T2 - targets, methods and outputs

    AU - Oke, Muse

    AU - Carter, Lester G

    AU - Johnson, Kenneth A

    AU - Liu, Huanting

    AU - McMahon, Stephen A

    AU - Yan, Xuan

    AU - Kerou, Melina

    AU - Weikart, Nadine D

    AU - Kadi, Nadia

    AU - Sheikh, Md Arif

    AU - Schmelz, Stefan

    AU - Dorward, Mark

    AU - Zawadzki, Michal

    AU - Cozens, Christopher

    AU - Falconer, Helen

    AU - Powers, Helen

    AU - Overton, Ian M

    AU - van Niekerk, C A Johannes

    AU - Peng, Xu

    AU - Patel, Prakash

    AU - Garrett, Roger A

    AU - Prangishvili, David

    AU - Botting, Catherine H

    AU - Coote, Peter J

    AU - Dryden, David T F

    AU - Barton, Geoffrey J

    AU - Schwarz-Linek, Ulrich

    AU - Challis, Gregory L

    AU - Taylor, Garry L

    AU - White, Malcolm F

    AU - Naismith, James H

    PY - 2010

    Y1 - 2010

    N2 - The Scottish Structural Proteomics Facility was funded to develop a laboratory scale approach to high throughput structure determination. The effort was successful in that over 40 structures were determined. These structures and the methods harnessed to obtain them are reported here. This report reflects on the value of automation but also on the continued requirement for a high degree of scientific and technical expertise. The efficiency of the process poses challenges to the current paradigm of structural analysis and publication. In the 5 year period we published ten peer-reviewed papers reporting structural data arising from the pipeline. Nevertheless, the number of structures solved exceeded our ability to analyse and publish each new finding. By reporting the experimental details and depositing the structures we hope to maximize the impact of the project by allowing others to follow up the relevant biology.

    AB - The Scottish Structural Proteomics Facility was funded to develop a laboratory scale approach to high throughput structure determination. The effort was successful in that over 40 structures were determined. These structures and the methods harnessed to obtain them are reported here. This report reflects on the value of automation but also on the continued requirement for a high degree of scientific and technical expertise. The efficiency of the process poses challenges to the current paradigm of structural analysis and publication. In the 5 year period we published ten peer-reviewed papers reporting structural data arising from the pipeline. Nevertheless, the number of structures solved exceeded our ability to analyse and publish each new finding. By reporting the experimental details and depositing the structures we hope to maximize the impact of the project by allowing others to follow up the relevant biology.

    U2 - 10.1007/s10969-010-9090-y

    DO - 10.1007/s10969-010-9090-y

    M3 - Article

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    VL - 11

    SP - 167

    EP - 180

    JO - Journal of Structural and Functional Genomics

    JF - Journal of Structural and Functional Genomics

    SN - 1345-711X

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    ER -