Tracing the ancestry of modern bread wheats

, Caroline Pont, Thibault Leroy, Michael Seidel, Alessandro Tondelli, Wandrille Duchemin, David Armisen, Daniel Lang, Daniela Bustos-Korts, Nadia Goué, François Balfourier, Márta Molnár-Láng, Jacob Lage, Benjamin Kilian, Hakan Özkan, Darren Waite, Sarah Dyer, Thomas Letellier, Michael Alaux, Joanne Russell & 10 others Beat Keller, Fred van Eeuwijk, Manuel Spannagl, Klaus F X Mayer, Robbie Waugh, Nils Stein, Luigi Cattivelli, Georg Haberer, Gilles Charmet, Jérôme Salse

Research output: Contribution to journalArticle

1 Citation (Scopus)

Abstract

For more than 10,000 years, the selection of plant and animal traits that are better tailored for human use has shaped the development of civilizations. During this period, bread wheat (Triticum aestivum) emerged as one of the world's most important crops. We use exome sequencing of a worldwide panel of almost 500 genotypes selected from across the geographical range of the wheat species complex to explore how 10,000 years of hybridization, selection, adaptation and plant breeding has shaped the genetic makeup of modern bread wheats. We observe considerable genetic variation at the genic, chromosomal and subgenomic levels, and use this information to decipher the likely origins of modern day wheats, the consequences of range expansion and the allelic variants selected since its domestication. Our data support a reconciled model of wheat evolution and provide novel avenues for future breeding improvement.

Original languageEnglish
Pages (from-to)905-911
Number of pages7
JournalNature Genetics
Volume51
Issue number5
DOIs
Publication statusPublished - 1 May 2019

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, Pont, C., Leroy, T., Seidel, M., Tondelli, A., Duchemin, W., ... Salse, J. (2019). Tracing the ancestry of modern bread wheats. Nature Genetics, 51(5), 905-911. https://doi.org/10.1038/s41588-019-0393-z
Pont, Caroline ; Leroy, Thibault ; Seidel, Michael ; Tondelli, Alessandro ; Duchemin, Wandrille ; Armisen, David ; Lang, Daniel ; Bustos-Korts, Daniela ; Goué, Nadia ; Balfourier, François ; Molnár-Láng, Márta ; Lage, Jacob ; Kilian, Benjamin ; Özkan, Hakan ; Waite, Darren ; Dyer, Sarah ; Letellier, Thomas ; Alaux, Michael ; Russell, Joanne ; Keller, Beat ; van Eeuwijk, Fred ; Spannagl, Manuel ; Mayer, Klaus F X ; Waugh, Robbie ; Stein, Nils ; Cattivelli, Luigi ; Haberer, Georg ; Charmet, Gilles ; Salse, Jérôme. / Tracing the ancestry of modern bread wheats. In: Nature Genetics. 2019 ; Vol. 51, No. 5. pp. 905-911.
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abstract = "For more than 10,000 years, the selection of plant and animal traits that are better tailored for human use has shaped the development of civilizations. During this period, bread wheat (Triticum aestivum) emerged as one of the world's most important crops. We use exome sequencing of a worldwide panel of almost 500 genotypes selected from across the geographical range of the wheat species complex to explore how 10,000 years of hybridization, selection, adaptation and plant breeding has shaped the genetic makeup of modern bread wheats. We observe considerable genetic variation at the genic, chromosomal and subgenomic levels, and use this information to decipher the likely origins of modern day wheats, the consequences of range expansion and the allelic variants selected since its domestication. Our data support a reconciled model of wheat evolution and provide novel avenues for future breeding improvement.",
author = "Caroline Pont and Thibault Leroy and Michael Seidel and Alessandro Tondelli and Wandrille Duchemin and David Armisen and Daniel Lang and Daniela Bustos-Korts and Nadia Gou{\'e} and Fran{\cc}ois Balfourier and M{\'a}rta Moln{\'a}r-L{\'a}ng and Jacob Lage and Benjamin Kilian and Hakan {\"O}zkan and Darren Waite and Sarah Dyer and Thomas Letellier and Michael Alaux and Joanne Russell and Beat Keller and {van Eeuwijk}, Fred and Manuel Spannagl and Mayer, {Klaus F X} and Robbie Waugh and Nils Stein and Luigi Cattivelli and Georg Haberer and Gilles Charmet and J{\'e}r{\^o}me Salse",
note = "The research leading to these results has received funding from the European Community’s Seventh Framework Programme (FP7/ 2007–2013) under grant agreement FP7- 613556, Whealbi project (http://www.whealbi.eu/project/). R.W. and J.R. also acknowledge support from the Scottish Government Research Program and R.W. from the University of Dundee. H.O. acknowledges support from {\cC}ukurova University (FUA-2016–6033). K.F.X.M. acknowledges support from the German Federal Ministry of Food and Agriculture (2819103915) and the DFG (SFB924). T.L. acknowledges supports from the Agence Nationale pour la Recherche (BirdIslandGenomic project 14-CE02-0002), European Research Council (TREEPEACE project, grant agreement 339728) and the bioinformatics platform from Toulouse Midi-Pyr{\'e}n{\'e}es (Bioinfo Genotoul) for providing computing and storage resources. J.S. acknowledges support from the R{\'e}gion Auvergne-Rh{\^o}ne-Alpes and FEDER Fonds Europ{\'e}ens de D{\'e}veloppement R{\'e}gional (23000816 SRESRI 2015), the CPER contrat de plan {\'E}tat-r{\'e}gion (23000892 SYMBIOSE 2016) and AgreenSkills fellowship (applicant ID 4146).",
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Pont, C, Leroy, T, Seidel, M, Tondelli, A, Duchemin, W, Armisen, D, Lang, D, Bustos-Korts, D, Goué, N, Balfourier, F, Molnár-Láng, M, Lage, J, Kilian, B, Özkan, H, Waite, D, Dyer, S, Letellier, T, Alaux, M, Russell, J, Keller, B, van Eeuwijk, F, Spannagl, M, Mayer, KFX, Waugh, R, Stein, N, Cattivelli, L, Haberer, G & Charmet, G & Salse, J 2019, 'Tracing the ancestry of modern bread wheats', Nature Genetics, vol. 51, no. 5, pp. 905-911. https://doi.org/10.1038/s41588-019-0393-z

Tracing the ancestry of modern bread wheats. /; Pont, Caroline; Leroy, Thibault; Seidel, Michael; Tondelli, Alessandro; Duchemin, Wandrille; Armisen, David; Lang, Daniel; Bustos-Korts, Daniela; Goué, Nadia; Balfourier, François; Molnár-Láng, Márta; Lage, Jacob; Kilian, Benjamin; Özkan, Hakan; Waite, Darren; Dyer, Sarah; Letellier, Thomas; Alaux, Michael; Russell, Joanne; Keller, Beat; van Eeuwijk, Fred; Spannagl, Manuel; Mayer, Klaus F X; Waugh, Robbie; Stein, Nils; Cattivelli, Luigi; Haberer, Georg; Charmet, Gilles; Salse, Jérôme (Lead / Corresponding author).

In: Nature Genetics, Vol. 51, No. 5, 01.05.2019, p. 905-911.

Research output: Contribution to journalArticle

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AU - Bustos-Korts, Daniela

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AU - Balfourier, François

AU - Molnár-Láng, Márta

AU - Lage, Jacob

AU - Kilian, Benjamin

AU - Özkan, Hakan

AU - Waite, Darren

AU - Dyer, Sarah

AU - Letellier, Thomas

AU - Alaux, Michael

AU - Russell, Joanne

AU - Keller, Beat

AU - van Eeuwijk, Fred

AU - Spannagl, Manuel

AU - Mayer, Klaus F X

AU - Waugh, Robbie

AU - Stein, Nils

AU - Cattivelli, Luigi

AU - Haberer, Georg

AU - Charmet, Gilles

AU - Salse, Jérôme

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Pont C, Leroy T, Seidel M, Tondelli A, Duchemin W et al. Tracing the ancestry of modern bread wheats. Nature Genetics. 2019 May 1;51(5):905-911. https://doi.org/10.1038/s41588-019-0393-z