Visual representation of database search results

the RHIMS Plot

David M. A. Martin (Lead / Corresponding author), Pamela Hill, Geoffrey J. Barton, Andrew J. Flavell

Research output: Contribution to journalArticle

1 Citation (Scopus)

Abstract

SUMMARY: An algorithm and software are described that provide a fast method to produce a novel, function-oriented visualization of the results of a sequence database search. Text mining of sequence annotations allows position specific plots of potential functional similarity to be compared in a simple compact representation.

AVAILABILITY: The application can be accessed via a web server at http://www.compbio.dundee.ac.uk. The RHIMS software may be obtained by request to the authors.

Original languageEnglish
Pages (from-to)1037-1038
Number of pages2
JournalBioinformatics
Volume19
Issue number8
DOIs
Publication statusPublished - 22 May 2003

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Keywords

  • Algorithms
  • Computer graphics
  • Database management systems
  • Databases, Nucleic acid
  • Gene expression profiling
  • Gene expression regulation, Plant
  • Information storage and retrieval
  • Sequence alignment
  • Sequence Analysis, DNA
  • Sequence Homology
  • Software
  • User-computer interface
  • Vicia sativa

Cite this

Martin, David M. A. ; Hill, Pamela ; Barton, Geoffrey J. ; Flavell, Andrew J. / Visual representation of database search results : the RHIMS Plot. In: Bioinformatics. 2003 ; Vol. 19, No. 8. pp. 1037-1038.
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Visual representation of database search results : the RHIMS Plot. / Martin, David M. A. (Lead / Corresponding author); Hill, Pamela; Barton, Geoffrey J.; Flavell, Andrew J.

In: Bioinformatics, Vol. 19, No. 8, 22.05.2003, p. 1037-1038.

Research output: Contribution to journalArticle

TY - JOUR

T1 - Visual representation of database search results

T2 - the RHIMS Plot

AU - Martin, David M. A.

AU - Hill, Pamela

AU - Barton, Geoffrey J.

AU - Flavell, Andrew J.

PY - 2003/5/22

Y1 - 2003/5/22

N2 - SUMMARY: An algorithm and software are described that provide a fast method to produce a novel, function-oriented visualization of the results of a sequence database search. Text mining of sequence annotations allows position specific plots of potential functional similarity to be compared in a simple compact representation.AVAILABILITY: The application can be accessed via a web server at http://www.compbio.dundee.ac.uk. The RHIMS software may be obtained by request to the authors.

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KW - Computer graphics

KW - Database management systems

KW - Databases, Nucleic acid

KW - Gene expression profiling

KW - Gene expression regulation, Plant

KW - Information storage and retrieval

KW - Sequence alignment

KW - Sequence Analysis, DNA

KW - Sequence Homology

KW - Software

KW - User-computer interface

KW - Vicia sativa

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