Visual representation of database search results: the RHIMS Plot

David M. A. Martin (Lead / Corresponding author), Pamela Hill, Geoffrey J. Barton, Andrew J. Flavell

Research output: Contribution to journalArticlepeer-review

1 Citation (Scopus)

Abstract

SUMMARY: An algorithm and software are described that provide a fast method to produce a novel, function-oriented visualization of the results of a sequence database search. Text mining of sequence annotations allows position specific plots of potential functional similarity to be compared in a simple compact representation.

AVAILABILITY: The application can be accessed via a web server at http://www.compbio.dundee.ac.uk. The RHIMS software may be obtained by request to the authors.

Original languageEnglish
Pages (from-to)1037-1038
Number of pages2
JournalBioinformatics
Volume19
Issue number8
DOIs
Publication statusPublished - 22 May 2003

Keywords

  • Algorithms
  • Computer graphics
  • Database management systems
  • Databases, Nucleic acid
  • Gene expression profiling
  • Gene expression regulation, Plant
  • Information storage and retrieval
  • Sequence alignment
  • Sequence Analysis, DNA
  • Sequence Homology
  • Software
  • User-computer interface
  • Vicia sativa

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