Visual representation of database search results: the RHIMS Plot

David M. A. Martin; Pamela Hill; Geoffrey J. Barton; Andrew J. Flavell

doi:10.1093/bioinformatics/btg116

Visual representation of database search results: the RHIMS Plot

David M. A. Martin (Lead / Corresponding author), Pamela Hill, Geoffrey J. Barton, Andrew J. Flavell

Research output: Contribution to journal › Article › peer-review

1 Citation (Scopus)

Abstract

SUMMARY: An algorithm and software are described that provide a fast method to produce a novel, function-oriented visualization of the results of a sequence database search. Text mining of sequence annotations allows position specific plots of potential functional similarity to be compared in a simple compact representation.

AVAILABILITY: The application can be accessed via a web server at http://www.compbio.dundee.ac.uk. The RHIMS software may be obtained by request to the authors.

Original language	English
Pages (from-to)	1037-1038
Number of pages	2
Journal	Bioinformatics
Volume	19
Issue number	8
DOIs	https://doi.org/10.1093/bioinformatics/btg116
Publication status	Published - 22 May 2003

Keywords

Algorithms
Computer graphics
Database management systems
Databases, Nucleic acid
Gene expression profiling
Gene expression regulation, Plant
Information storage and retrieval
Sequence alignment
Sequence Analysis, DNA
Sequence Homology
Software
User-computer interface
Vicia sativa

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10.1093/bioinformatics/btg116

Cite this

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title = "Visual representation of database search results: the RHIMS Plot",

abstract = "SUMMARY: An algorithm and software are described that provide a fast method to produce a novel, function-oriented visualization of the results of a sequence database search. Text mining of sequence annotations allows position specific plots of potential functional similarity to be compared in a simple compact representation.AVAILABILITY: The application can be accessed via a web server at http://www.compbio.dundee.ac.uk. The RHIMS software may be obtained by request to the authors.",

keywords = "Algorithms, Computer graphics, Database management systems, Databases, Nucleic acid, Gene expression profiling, Gene expression regulation, Plant, Information storage and retrieval, Sequence alignment, Sequence Analysis, DNA, Sequence Homology, Software, User-computer interface, Vicia sativa",

author = "Martin, \{David M. A.\} and Pamela Hill and Barton, \{Geoffrey J.\} and Flavell, \{Andrew J.\}",

year = "2003",

month = may,

day = "22",

doi = "10.1093/bioinformatics/btg116",

language = "English",

volume = "19",

pages = "1037--1038",

journal = "Bioinformatics",

issn = "1367-4803",

publisher = "Oxford University Press",

number = "8",

}

TY - JOUR

T1 - Visual representation of database search results

T2 - the RHIMS Plot

AU - Martin, David M. A.

AU - Hill, Pamela

AU - Barton, Geoffrey J.

AU - Flavell, Andrew J.

PY - 2003/5/22

Y1 - 2003/5/22

N2 - SUMMARY: An algorithm and software are described that provide a fast method to produce a novel, function-oriented visualization of the results of a sequence database search. Text mining of sequence annotations allows position specific plots of potential functional similarity to be compared in a simple compact representation.AVAILABILITY: The application can be accessed via a web server at http://www.compbio.dundee.ac.uk. The RHIMS software may be obtained by request to the authors.

AB - SUMMARY: An algorithm and software are described that provide a fast method to produce a novel, function-oriented visualization of the results of a sequence database search. Text mining of sequence annotations allows position specific plots of potential functional similarity to be compared in a simple compact representation.AVAILABILITY: The application can be accessed via a web server at http://www.compbio.dundee.ac.uk. The RHIMS software may be obtained by request to the authors.

KW - Algorithms

KW - Computer graphics

KW - Database management systems

KW - Databases, Nucleic acid

KW - Gene expression profiling

KW - Gene expression regulation, Plant

KW - Information storage and retrieval

KW - Sequence alignment

KW - Sequence Analysis, DNA

KW - Sequence Homology

KW - Software

KW - User-computer interface

KW - Vicia sativa

U2 - 10.1093/bioinformatics/btg116

DO - 10.1093/bioinformatics/btg116

M3 - Article

C2 - 12761069

SN - 1367-4803

VL - 19

SP - 1037

EP - 1038

JO - Bioinformatics

JF - Bioinformatics

IS - 8

ER -

Visual representation of database search results: the RHIMS Plot

Abstract

Keywords

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