What will a genome sequence do for fire blight research?

Pectobacterium atrosepticum and potato - a case study

I. K. Toth, P. R. J. Birch, H. Liu, L. Pritchard, S. Humphris, M. Ravensdale, L. Moleleki, C. Robert, P. Hedley, E. M. Gilroy

    Research output: Contribution to journalArticle

    Abstract

    Genomics research is changing the way we study all forms of life, and the interaction between plant pathogens and their hosts is benefiting greatly from the genomics revolution. To have the "genetic blueprint" for a pathogen is of immeasurable value as it lays bare the potential capabilities of that organism and allows comparisons to be made with others. Although genomics opens up the field of research it also has the potential to target key genes and mechanisms precisely. In 2004 the first genome of an enterobacterial plant pathogen (Pectobacterium atrosepticum Pba - formerly Erwinia carotovora subsp. atroseptica) was sequenced and several more are now available, including Erwinia amylovora. Based on this genome sequence, microarrays, bioinformatics, comparative genomics and systems biology have all been used to advance our knowledge of the pathogen, together with new discoveries in potential alternative hosts in the environment and comparisons to Pba's human and animal enterobacterial cousins E. coli and Salmonella.
    Original languageEnglish
    Pages (from-to)157-162
    Number of pages6
    JournalActa Horticulturae
    Volume793
    Publication statusPublished - 2008
    Event11th International Workshop on Fire Blight - Portland, Oregon, United States
    Duration: 12 Aug 200717 Aug 2007
    http://oregonstate.edu/conferences/event/fireblight2007/

    Fingerprint

    Pectobacterium carotovorum
    Erwinia amylovora
    potatoes
    case studies
    genomics
    genome
    plant pathogens
    Pectobacterium carotovorum subsp. atrosepticum
    alternative hosts
    pathogens
    bioinformatics
    Salmonella
    Escherichia coli
    Biological Sciences
    organisms
    animals
    genes

    Keywords

    • Animalia
    • Enterobacteriaceae
    • Erwinia amylovora
    • Escherichia coli
    • Pectobacterium
    • Pectobacterium atrosepticum
    • Pectobacterium carotovorum
    • Salmonella
    • Solanum tuberosum
    • Genomics
    • Fire blight

    Cite this

    Toth, I. K., Birch, P. R. J., Liu, H., Pritchard, L., Humphris, S., Ravensdale, M., ... Gilroy, E. M. (2008). What will a genome sequence do for fire blight research? Pectobacterium atrosepticum and potato - a case study. Acta Horticulturae, 793, 157-162.
    Toth, I. K. ; Birch, P. R. J. ; Liu, H. ; Pritchard, L. ; Humphris, S. ; Ravensdale, M. ; Moleleki, L. ; Robert, C. ; Hedley, P. ; Gilroy, E. M. / What will a genome sequence do for fire blight research? Pectobacterium atrosepticum and potato - a case study. In: Acta Horticulturae. 2008 ; Vol. 793. pp. 157-162.
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    Toth, IK, Birch, PRJ, Liu, H, Pritchard, L, Humphris, S, Ravensdale, M, Moleleki, L, Robert, C, Hedley, P & Gilroy, EM 2008, 'What will a genome sequence do for fire blight research? Pectobacterium atrosepticum and potato - a case study', Acta Horticulturae, vol. 793, pp. 157-162.

    What will a genome sequence do for fire blight research? Pectobacterium atrosepticum and potato - a case study. / Toth, I. K.; Birch, P. R. J.; Liu, H.; Pritchard, L.; Humphris, S.; Ravensdale, M.; Moleleki, L.; Robert, C.; Hedley, P.; Gilroy, E. M.

    In: Acta Horticulturae, Vol. 793, 2008, p. 157-162.

    Research output: Contribution to journalArticle

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    T1 - What will a genome sequence do for fire blight research?

    T2 - Pectobacterium atrosepticum and potato - a case study

    AU - Toth, I. K.

    AU - Birch, P. R. J.

    AU - Liu, H.

    AU - Pritchard, L.

    AU - Humphris, S.

    AU - Ravensdale, M.

    AU - Moleleki, L.

    AU - Robert, C.

    AU - Hedley, P.

    AU - Gilroy, E. M.

    N1 - Copyright 2009 Elsevier B.V., All rights reserved.

    PY - 2008

    Y1 - 2008

    N2 - Genomics research is changing the way we study all forms of life, and the interaction between plant pathogens and their hosts is benefiting greatly from the genomics revolution. To have the "genetic blueprint" for a pathogen is of immeasurable value as it lays bare the potential capabilities of that organism and allows comparisons to be made with others. Although genomics opens up the field of research it also has the potential to target key genes and mechanisms precisely. In 2004 the first genome of an enterobacterial plant pathogen (Pectobacterium atrosepticum Pba - formerly Erwinia carotovora subsp. atroseptica) was sequenced and several more are now available, including Erwinia amylovora. Based on this genome sequence, microarrays, bioinformatics, comparative genomics and systems biology have all been used to advance our knowledge of the pathogen, together with new discoveries in potential alternative hosts in the environment and comparisons to Pba's human and animal enterobacterial cousins E. coli and Salmonella.

    AB - Genomics research is changing the way we study all forms of life, and the interaction between plant pathogens and their hosts is benefiting greatly from the genomics revolution. To have the "genetic blueprint" for a pathogen is of immeasurable value as it lays bare the potential capabilities of that organism and allows comparisons to be made with others. Although genomics opens up the field of research it also has the potential to target key genes and mechanisms precisely. In 2004 the first genome of an enterobacterial plant pathogen (Pectobacterium atrosepticum Pba - formerly Erwinia carotovora subsp. atroseptica) was sequenced and several more are now available, including Erwinia amylovora. Based on this genome sequence, microarrays, bioinformatics, comparative genomics and systems biology have all been used to advance our knowledge of the pathogen, together with new discoveries in potential alternative hosts in the environment and comparisons to Pba's human and animal enterobacterial cousins E. coli and Salmonella.

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    KW - Pectobacterium atrosepticum

    KW - Pectobacterium carotovorum

    KW - Salmonella

    KW - Solanum tuberosum

    KW - Genomics

    KW - Fire blight

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    JO - Acta Horticulturae

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    ER -